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He studied Indology in Germany (from 1965 to 1971) under Paul Thieme, H.-P. Schmidt, K. Hoffmann and J. Narten as well as in Nepal (1972-1973) under the M?m?msaka Jununath Pandit.
At Kathmandu (1972-1978), he led the Nepal-German Manuscript Preservation Project and the Nepal Research Centre. He has taught at Tübingen (1972), Leiden (1978-1986), and at Harvard (since 1986) and has held visiting appointments at Kyoto (twice), Paris (twice), and Tokyo (twice). He has been teaching Sanskrit since 1972.
He is noted for his studies of the dialects of Vedic Sanskrit, old Indian history, the development of Vedic religion, and the linguistic prehistory of the Indian Subcontinent.
He is editor-in-chief of the Electronic Journal of Vedic Studies (EJVS) and the Harvard Oriental Series. He has been president of the Association for the Study of Language in Prehistory (ASLIP) since 1999, as well as of the new International Association for Comparative Mythology (2006-).
He was elected into the American Academy of Arts and Sciences in 2003, and was elected as an honorary member of the German Oriental Society (DMG) in 2009. He became Cabot Fellow, Faculty of Arts and Sciences, Harvard U. (2013), recognizing his book on comparative mythology (OUP, 2012)
Witzel's early philological work deals with the oldest texts of India, the Vedas, their manuscripts and their traditional recitation; it included some editions and translations of unknown texts (1972). such as the Katha Aranyaka. He has begun, together with T. Goto et al. a new translation of the Rigveda into German (Books I-II, 2007, Books III-V 2012)
He studied at length the various Vedic recensions (kh?) and their importance for the geographical spread of Vedic culture across North India and beyond. This resulted in book-length investigations of Vedic dialects (1989), the development of the Vedic canon (1997), and of Old India as such (2003, reprint 2010).
Shorter papers provide analyses of important religious (2004) and literary concepts of the period, and its Central Asian antecedents as well as such as the oldest frame story (1986, 1987), prosimetric texts (1997), the Mahabharata (2005), the concept of rebirth (1984), the 'line of progeny' (2000), splitting one's head in discussion (1987), the holy cow (1991), the Milky Way (1984), the asterism of the Seven Rsis (1995, 1999), the sage Yajnavalkya (2003), supposed female Rishis in the Veda (2009,) the persistence of some Vedic beliefs, in modern Hinduism (1989 2002, with cultural historian Steve Farmer and John B. Henderson), as well as some modern Indocentric tendencies (2001-).
Other work (1976-) deals with the traditions of medieval and modern India and Nepal,
 including its linguistic history, Brahmins, rituals, and kingship (1987) and present day culture, as well as with Old Iran and the Avesta (1972-), including its homeland in Eastern Iran and Afghanistan (2000).
After 1987, he has increasingly focused on the localization of Vedic texts (1987) and the evidence contained in them for early Indian history, notably that of the Rgveda and the following period, represented by the Black Yajurveda Samhitas and the Brahmanas. This work has been done in close collaboration with Harvard archaeologists such as R. Meadow, with whom he has also co-taught. Witzel aims at indicating the emergence of the Kuru tribe in the Delhi area (1989, 1995, 1997, 2003), its seminal culture and its political dominance, as well as studying the origin of late Vedic polities and the first Indian empire in eastern North India (1995, 1997, 2003, 2010).
The linguistic aspect of earliest Indian history has been explored in a number of papers (1993, 1999, 2000, 2001, 2006, 2009) dealing with the pre-Vedic substrate languages of Northern India. These result in a substantial amount of loan words from a prefixing language ("Para-Munda") similar to but not identical with Austroasiatic (Munda, Khasi, etc.) as well as from other unidentified languages. In addition, a considerable number of Vedic and Old Iranian words are traced back to a Central Asian substrate language (1999, 2003, 2004, 2006). This research is constantly updated, in collaboration with F. Southworth and D. Stampe, by the SARVA project including its South Asian substrate dictionary.
In recent years, he has explored the links between old Indian, Eurasian and other mythologies (1990, 2001-2010) resulting in a new scheme of historical comparative mythology that covers most of Eurasia and the Americas ("Laurasia", cf. the related Harvard, Kyoto, Beijing, Edinburgh, Ravenstein (Netherlands), Tokyo, Strasbourg, St.Petersburg, Tübingen, Yerevan conferences of IACM). This approach has been pursued in a number of papers. A book published in late 2012 deals with the newly proposed method of historical comparative mythology at length; for scholarly criticism see  and for periodic updates see 
Recently, he has also published (2001-) articles criticizing what he calls "spurious interpretations" of Vedic texts and decipherments of Indus inscriptions such as that of N.S. Rajaram.
He has questioned the linguistic nature of the so-called Indus Script (Farmer, Sproat, Witzel 2004). Earlier, he had suggested that a substrate related to, but not identical with the Austroasiatic Munda languages, which he therefore calls para-Munda, might have been the language of (part of) the Indus population.
He has organized a number of international conferences at Harvard such as the first of the intermittent International Vedic Workshops (1989,1999,2004; 2011 at Bucharest, 2014 at Kozhikode, Kerala), the first of several annual International Conferences on Dowry and Bride-Burning in India (1995 sqq.), the yearly Round Tables on the Ethnogenesis of South and Central Asia (1999 sqq) and, since 2005, conferences on comparative mythology (Kyoto, Beijing, Edinburgh, Ravenstein (Netherlands), Tokyo, Harvard, Tokyo). as well as at Strasbourg, St.Petersburg, Tübingen and Yerevan.
At the Beijing conference he founded the International Association for Comparative Mythology.
California textbook controversy over Hindu history
In 2005, Witzel joined other academics and activist groups to oppose changes to California state school history textbooks proposed by US-based Hindu groups, mainly The Vedic Foundation and Hindu Education Foundation (HEF), arguing that the changes were not of a scholarly but of a religious-political nature.[note 1] He was appointed to an expert panel set up to review the changes and helped draft the compromise edits that were later adopted.
Witzel's efforts received the support of academics and some community groups,
but attracted severe criticism from those supporting the original changes, who questioned his expertise on the subject and his appointment to the expert panel.
Witzel was issued a subpoena by the California Parents for Equalization of Educational Materials (CAPEEM), a group founded specifically for the schoolbook case, in November 2006 to support their law case against the California authorities' decisions in the textbook case. He was sued by CAPEEM to compel with the subpoena in Massachusetts courts, which was however dismissed twice. He had already submitted documents to CAPEEM and undergone a deposition.
Witzel was also accused of being biased against Hinduism, an allegation he denies.
Rejecting criticism that he was a 'Hindu hater', Witzel said, "I hate people who misrepresent history."
The HEF campaign was dismissed by critics as "one driven by the sectarian agenda of the Sangh Parivar, a term commonly used to describe the Hindu nationalist triumvirate of India's Bharatiya Janata Party, the Rashtriya Swayamsevak Sangh and the Vishwa Hindu Parishad." In a letter to the Board of Education, Vinay Lal, a history professor at the University of California at Los Angeles, wrote:
As far as I am aware, the Hindu Education Foundation and Vedic Foundation and their supporters do not number among their ranks any academic specialists in Indian history or religion other than Professor Bajpai himself. It is a remarkable fact that, in a state which has perhaps the leading public research university system in the United States, these two foundations could not find a single professor of Indian history or religion within the UC system (with its ten campuses) to support their views. Indeed, it would be no exaggeration to say that they would be hard pressed to find a single scholar at any research university in the United States who would support their views.
In a 2004 article, Farmer, Sproat, and Witzel presented a number of arguments in support of their thesis that the Indus script is nonlinguistic, principal among them being the extreme brevity of the inscriptions, the existence of too many rare signs increasing over the 700-year period of the Mature Harappan civilization, and the lack of random-looking sign repetition typical for representations of actual spoken language (whether syllabic-based or letter-based), as seen, for example, in Egyptian cartouches.
Asko Parpola, reviewing the Farmer, Sproat, and Witzel thesis in 2005, states that their arguments "can be easily controverted". He cites the presence of a large number of rare signs in Chinese, and emphasizes that there is "little reason for sign repetition in short seal texts written in an early logo-syllabic script". Revisiting the question in a 2007 lecture, Parpola takes on each of the 10 main arguments of Farmer et al., presenting counterarguments. He states that "even short noun phrases and incomplete sentences qualify as full writing if the script uses the rebus principle to phonetize some of its signs". All these points are rejected in a lengthy paper by Richard Sproat, "Corpora and Statistical Analysis of Non-Linguistic Symbol Systems" (2012)..
^Meenakshi Ganjoo: "[Witzel] requested the Board of Education to reject the "Hindutva recommended" changes. Witzel wrote to the CBE President, "The proposed revisions are not of a scholarly but of a religious-political nature and are primarily promoted by Hindutva supporters and non-specialist academics writing about issues far outside their area of expertise." About 50 international scholars specializing in Indian history and culture, including Indian historian Romila Thapar and D N Jha, endorsed the letter."
^Katha Âranyaka. Critical edition with a translation into German and an introduction. Cambridge: Harvard Oriental Series 65. 2004 [pp. lxxix, XXVI, 220, with color facsimiles of the Kashmir bhûrja MS]
^Rig-Veda. Das heilige Wissen. Erster und zweiter Liederkreis. Aus dem vedischen Sanskrit übersetzt und herausgegeben von Michael Witzel und Toshifumi Goto unter Mitarbeit von Eijiro Doyama und Mislav Jezic. Frankfurt: Verlag der Weltreligionen 2007, pp. 1-889; first complete translation of the Rgveda into a western language since Geldner's of 1929/1951). amazon.de
^S. W. Jamison and M. Witzel, Vedic Hinduism, written in 1992/95, pdf, accessed September 13, 2007; according to his list of publications a shorter version appeared in The Study of Hinduism, ed. A. Sharma (University of South Carolina Press, 2003), pp. 65-113.
^The Rgvedic Religious System and its Central Asian and Hindukush Antecedents In: A. Griffiths & J.E.M. Houben (eds.). The Vedas: Texts, Language and Ritual. Groningen: Forsten 2004: 581-636 forsten.nl
^Das Alte Indien [History of Old India]. München: C.H. Beck [C.H. Beck Wissen in der Beck'schen Reihe] 2003, revised reprint 2010
^ abMoving Targets? Texts, language, archaeology, and history in the Late Vedic and early Buddhist periods. Indo-Iranian Journal 52, 2009, 287-310
^Brahmanical Reactions to Foreign Influences and to Social and Religious Change. In: Olivelle, P. (ed.) Between the Empires. Society in India between 300 BCE and 400 CE. Oxford: Oxford University Press 2006: 457-499
^Michael Witzel, The Home of the Aryans, Anusantatyi: Festschrift fuer Johanna Narten zum 70. Geburtstag, ed. A. Hinze and E. Tichy (Münchener Studien zur Sprachwissenschaft, Beihefte NF 19) Dettelbach: J. H. Roell 2000, 283-338, pdf, accessed September 21, 2007.
^South Asian agricultural vocabulary. In: T. Osada (ed.). Proceedings of the Pre-Symposium of RHIN and 7th ESCA Harvard-Kyoto Round Table. Published by the Research Institute for Humanity and Nature (RHIN), Kyoto, Japan 2006: 96-120
^The linguistic history of some Indian domestic plants
Journal of Biosciences Dec. 2009, 829-833 ias.ac.inuas.ac.in
^Michael Witzel, Kumano.kara Woruga.made ("From Kumano to the Volga"), Zinbun 36, Kyoto 1990, pp. 4-5, in Japanese, accessed September 21, 2007.
^Comparison and Reconstruction : Language and Mythology. Mother Tongue VI 2001, 45-62 
^Vala and Iwato. The Myth of the Hidden Sun in India, Japan and beyond. EJVS 12-1, (March 1, 2005), 1-69
^Out of Africa: the Journey of the Oldest Tales of Humankind. In: Generalized Science of Humanity Series, Vol. I. Tokyo: Research Institute for Languages and Cultures of Asia and Africa 2006: 21-65 
^Slaying the dragon across Eurasia. In: Bengtson, John D. (ed.) In Hot Pursuit of Language in Prehistory. Essays in the four fields of anthropology. In honor of Harold Crane Fleming. Amsterdam/Philadelphia: John Benjamin's Publishing Company 2008: 263-286
^Chuo Ajia Shinwa to Nihon Shinwa [Central Asian Mythology and Japanese Mythology; in Japanese], Annual Report of the Institute for Japanese Culture and Classics, Kokugakuin University. Heisei 21, (Sept. 2009), 85-96
^Releasing the Sun at Midwinter and Slaying the Dragon at Midsummer: A Laurasian Myth Complex. In: Cosmos. The Journal of the Traditional Cosmology Society, 23, 2007 , 203-244
^3. Pan-Gaean Flood Myths: Gondwana myths - and beyond. In: New Perspectives on Myth. Proceedings of the Second Annual Conference of the International Association for Comparative Mythology, Ravenstein (The Netherlands) August 19-21, 2008, ed. W. J.M. van Binsbergen and Eric Venbrux. PIP-TraCS No.
5, Haarlem 2010: 225-242
^. Shamanism in Northern and Southern Asia: Their distinctive methods of change of consciousness. Social Sciences Information/Information sur les sciences sociales 50 (1) March 2011 (Paris): 2011: 39-61, cf.: 
^Vala and Iwato. The Myth of the Hidden Sun in India, Japan and beyond EJVS 12-1, (March 1, 2005), 1-69
^Creation myths. In: T. Osada (ed.), Proceedings of the Pre-Symposium of RHIN and 7th ESCA Harvard-Kyoto Round Table. Published by the Research Institute for Humanity and Nature (RHIN), Kyoto, Japan 2006: 284-318
^Out of Africa: the Journey of the Oldest Tales of Humankind. In: Generalized Science of Humanity Series, Vol. I. Tokyo: Research Institute for Languages and Cultures of Asia and Africa 2006: 21-65
^Myths and Consequences. Review of Stefan Arvidsson, Indo-European Mythology as Ideology and Science. (Chicago University Press 2006). Science, vol. 317, September 28, 2007, 1868-1869 (Manuscript Number: 1141619). sciencemag.org
^Rama's Realm: Indocentric Rewritings of Early South Asian Archaeology and History. In: Archaeological Fantasies. How Pseudoarchaeology Misrepresents the Past and Misleads the Public, ed. by G. G. Fagan.London/New York: Routledge 2006:203-232 -- Discussion by Colin Renfrew
^Indocentrism: Autochthonous visions of ancient India. In: The Indo-Aryan controversy : evidence and inference in Indian history / edited by Edwin F. Bryant and Laurie L. Patton. London & New York : Routledge, 2005: 341-404
^ abHindutva View of History. Rewriting Textsbook in India and the United States. (with K. Visvesvaran, Nandini Majrekar, Dipta Bhog, and Uma Chakravarti).
Georgetown Journal of International Affairs. 10th Anniversary edition. Winter/Spring 2009, 101-112